Monday, December 29, 2014

Weekly Links 27 December 2014


“MUST READ”
o    Langer came to believe that one way to enhance well-being was to use all sorts of placebos. Placebos aren’t just sugar pills disguised as medicine, though that’s the literal definition; they are any intervention, benign but believed by the recipient to be potent, that produces measurable physiological changes.
DISRUPTION, REVOLUTION
tags: sequencing
o    Last week, US tech giants Google made a splash in the media, announcing plans to develop new ‘disease-detecting magnetic nanoparticles’.
o    But when we tried to dig deeper into the detail behind the story, things remained pretty light on actual context and detail. So we spoke to Professor Duncan Graham – a UK-based nanoscientist from University of Strathclyde and expert advisor to Cancer Research UK – to get his take on the announcement.
TOOLS/TECHNIQUES
o    Herein, we tested four cDNA synthesis and Illumina library preparation protocols on  a simplified mixture of total RNA extracted from four bacterial species. In parallel,  RNA from each microbe was tested individually. cDNA synthesis was performed on rRNA  depleted samples using the TruSeq Stranded Total RNA Library Preparation, the SMARTer  Stranded RNA-Seq, or the Ovation RNA-Seq V2 System.
o    When targeting genes, drug developers may opt for knockdown via CRISPR or silencing via RNAi. These weapons, however, may fit different battle plans.
o    Recent progress in probing gene function via the RNAi and CRISPR methods were a strong theme of the Discovery On Target conference, which took place last month in Boston. Both methods enable researchers to impair the function of a targeted gene.
HEALTH/MEDECINE
o    Studies have found that changes in our microbiome accompany medical problems from obesity to diabetes to colon cancer.
As these correlations have unfurled, so has the hope that we might fix these ailments by shunting our bugs toward healthier states. The gigantic probiotics industry certainly wants you to think that, although there is little evidence that swallowing a few billion yogurt-borne bacteria has more than a small impact on the trillions in our guts.
COMPANIES
o    Cell-free protein expression, as is called the method Invenra and Sutro use, still requires all the “goo” —the protein-making machinery—from inside cells as the growing medium. But it doesn’t require the cells themselves. Once the right mix is in place, the next key ingredient to add is the DNA of the desired protein.
Much faster than conventional cell-based methods, cell-free expression has been available to researchers for years, but Sutro is likely the first biotech to scale it up into what could be a major therapeutic platform
o    When we last left Jonathan Rothberg, the entrepreneur who first throttled DNA sequencing onto its Moore’s Law-beating path, he was leaving behind his genetics work in the tangle of Thermo Fisher’s $14 billion purchase of Life Technologies Life Technologies, which had previously bought his startup, Ion Torrent.
 
Rothberg, one of the most colorful entrepreneurs in biotech, went strangely quiet for eighteen months. Now he’s back with a new incubator (called 4Combinator) and a new startup, Butterfly Network, into which he has put $20 million of his own money and $80 million more from investors to develop a device that sounds like it’s right out of Star Trek: an ultrasound scanner that can give vivid images quickly and cheaply, and that will eventually be able to use beams of concentrated sound to perform some types of surgical procedures.
SOMETHING DIFFERENT

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